Content taken from ChinBin's original site for reference

Genetics, Colors, Genotype and Phenotype of chinchillas



This is a compilation from Chinbin's original site.

INTRODUCTION | DEFINITIONS | THE COLOR GENES | MY NOMENCLATURE
PUNNET SQUARES | POSSIBLE OUTCOMES

Introduction



Definitions
(if you want to just skip this section to go right to the possible breeding outcomes then go here )

ALLELES | CARRIER | CO-DOMINANT GENES| CO-RECESSIVE GENES | DOMINANT GENE | GENES | GENOTYPE | HETEROZYGOUS | HOMOZYGOUS | INCOMPLETE DOMINANT GENE | LETHAL FACTOR | PHENOTYPE | POLYGENIC | RECESSIVE GENE | WEAKLY DOMINANT ACCUMULATIVE GENE

ALLELES - An allele is a pair of genes for the same trait. In this case I will only be discussing alleles for color traits, but there is much more to consider when breeding chinchillas - size, coat quality, conformation, temperament, congenital disease, etc.

CARRIER - An animal is referred to as a "carrier" of one or more recessive color genes if it carries a heterozygous or polygenic allele with one or more dominant genes and one or more recessive genes. For instance a TOV/White Mosaic/Violet carrier has a gene structure of dominant TOV + dominant White + recessive Violet. The violet color won't show phenotypically, but the animal is a Violet carrier and may throw that gene when bred.

CO-DOMINANT GENES - When two or more dominant genes exist polygenically. Some examples are:

Velvet + Beige = Brown Velvet (TOV Beige)
Beige + White = Pink White (or Beige Mosaic)
Velvet + White = TOV White (or Black and White)
Velvet + Beige + White = TOV Pink White

CO-RECESSIVE GENES - When two or more recessive genes exist polygenically, like Violet + Sapphire = Violet Sapphire

DOMINANT GENE- A gene whose trait will develop in the offspring even though it is present in the genetic material of only one of the parents, hence heterozygous in the offspring. The dominant genes for color are Velvet (TOV, Touch or Velvet, or Black), Beige, and White. Standard is recessive to them. Standard is then dominant to Charcoal, Violet, Sapphire, and Recessive Beige which are all recessive to everything. White is actually an incomplete dominant gene, hence the ability of the underlying Standard gene to show through in different degrees - Wilson White, White Mosaic, or Silver. Ebony is a weakly dominant accumulative gene and is therefore expressed to varying degrees (depending upon how many generations of Ebony are bred in) with either dominant or recessive colors.

GENES - The basic unit of heredity. Heredity traits are controlled by pairs of genes in the same position on a pair of chromosomes. These gene pairs, or alleles, may both be dominant, both be recessive, or may be polygenic.

GENOTYPE - The basic hereditary combination of genes in an organism. This is not to be misconstrued as "the parents necessary to produce a certain color", as several different combinations could possibly produce the desired color of offspring.

HETEROZYGOUS - Heterozygous alleles are gene pairs consisting of two or more different genes.

HOMOZYGOUS - Homozygous alleles are gene pairs consisting of two of the same gene. Some genes cannot exist in the homozygous state due to a lethal factor (i.e.. White and Velvet).

INCOMPLETE DOMINANT GENE - A dominant gene whose trait is expressed in varying degrees with other genes. White is an incomplete dominant gene for color in chinchillas and, in combination with Standard Grey, results in either White Mosaic, Wilson White, or Silver. When combined with homozygous recessive colors (i.e.. White + Violet, White + Sapphire), the recessive color trait will appear in varying degrees. Beige also seems to have an incomplete nature as homozygous recessive colors will be visible with it.

WEAKLY DOMINANT ACCUMULATIVE GENE - A gene whose trait is expressed polygenically even in the heterozygous state with either dominant or recessive genes in varying degrees, depending upon how many generations of this gene are bred into an animal. Ebony is an example of this.

LETHAL FACTOR - This term refers to the inability of certain genes to exist in the homozygous state. The two lethal genes for color involved in chinchillas are White and Velvet (also referred to as TOV - "Touch of Velvet" - or Black, not to be confused with Violet). If a homozygous allele of White + White or Velvet + Velvet results from a breeding, the embryo will never develop but be reabsorbed by the mother. It has been said that this may result in a blocked uterine horn (chinchillas have two horns to their uterus that branch out from the cervix).

PHENOTYPE - The physical appearance or makeup of an individual. A group of individuals who resemble each other phenotypically may differ in genetic makeup. Conversely, a group of individuals who are identical for color genotypically may differ phenotypically. This is often the case when the weakly dominant ebony gene is present.

POLYGENIC - Pertaining to or caused by several genes. Traits that are determined by a series of gene pairs are referred to as polygenic. Some common examples of polygenic colors involving co-dominant genes in chinchillas are Pink White (Beige + White), Black Velvet (TOV + Standard), and Brown Velvet (TOV + Beige). An example of a polygenic color involving co-recessive genes are Violet Sapphire (Homo Violet + Homo Sapphire). It gets much more complicated with, for instance, a TOV/Ebony/White Mosaic/Violet carrier or perhaps TOV/Tan/Sapphire carrier where dominant, weakly dominant and recessive genes are involved. The possibilities are almost endless and polygenic traits are very difficult to predict as there are many possible gene combinations when breeding these animals.

RECESSIVE GENE - A gene whose trait will not be expressed in the heterozygous state but will only be expressed in the homozygous state. The recessive genes for color in chinchillas are Violet, Sapphire, Recessive Beige, and Charcoal (sorry - not dealt with here until I learn more).


The Color Genes

BEIGE - A dominant gene. A chinchilla referred to as just Beige is a Hetero Beige and is genetically Beige + Standard. A Homo Beige is genetically Beige + Beige. It may be more accurate to call this an incomplete dominant gene as homozygous recessive colors can show through the beige color.

CHARCOAL - A recessive gene. A chinchilla referred to as Charcoal is genetically Charcoal + Charcoal. This chinchilla looks like a medium light Hetero Ebony. It can be hard to differentiate them if the animals pedigree is uncertain.

EBONY - A weakly dominant accumulative gene. There is a lot of confusion and disagreement about whether Ebony is incomplete recessive or weakly dominant, but I'm going with the information in the recently released "Basic Genetics and History of Mutation Chinchillas" book put out by MCBA. A chinchilla referred to as just Ebony is genetically Ebony + Ebony while a Hetero Ebony is Ebony + Standard. This gene is more for color PATTERN then for actual color. It darkens any color that it is combined with and creates the "wrap around" effect - tummy color same as the back color rather then whitish. Hence, a Tan chinchilla (Beige + Ebony) is dark beige with a beige tummy. A Solid Violet chinchilla (Violet + Ebony) is dark violet with a violet tummy, etc. The "accumulative" nature of the gene refers to the fact that successive generations of breeding into Ebony creates darker and darker animals.

RECESSIVE BEIGE - A recessive gene. A chinchilla referred to as Recessive Beige is genetically Rec. Beige + Rec. Beige. They look very much like the dominant beige except that the eyes are either a very clear red like jelly beans or black like a Standard or White. I won't be including this color in my list of colors as I'm still uncertain about how it behaves genetically, although I believe it is a simple recessive gene, plus I'm considering the fact that it is such an extremely rare color mutation.

SAPPHIRE - A recessive gene. A chinchilla referred to as Sapphire is genetically Sapphire + Sapphire. This chinchilla looks like a very light Standard, with a distinctly bluish cast and pink ears.

STANDARD - The original wild color, often referred to as Standard Grey or just Grey, this gene is recessive to Beige, Velvet (TOV, Black), and White. It is weakly dominant with Ebony. It is dominant to Charcoal, Recessive Beige, Sapphire, and Violet. A chinchilla referred to as simply Standard is genetically Standard + Standard. This gene is present in basic White (White + Standard), basic Beige (Beige + Standard), and Black Velvet (TOV + Standard). It is also present in the Hetero Ebony (Ebony + Standard). In the heterozygous state with Charcoal, Recessive Beige, Sapphire, or Violet you would get a Standard/ Charcoal carrier, Standard/ Rec. Beige carrier, Standard/ Sapphire carrier, or Standard/ Violet carrier.

VELVET - A dominant gene, also referred to as TOV (Touch of Velvet)or "Black". This gene, like Ebony, is a gene for color PATTERN rather then color. It darkens and solidifies any color that it is combined with, creates a distinct contrast between the back and tummy color, and causes distinct stripes on the front paws. Hence, a Black Velvet is TOV + Standard, a Brown Velvet is TOV + Beige, or you could get TOV White, TOV Violet, TOV Sapphire, and many more. This gene cannot exist in the homozygous state due to the lethal factor.

VIOLET - A recessive gene. A chinchilla referred to as simply Violet is genetically Violet + Violet.

WHITE - An incomplete dominant gene. White Mosaic , Wilson White , and Silver chinchillas are all genetically the same - White + Standard. They vary phenotypically due the degree of influence of the Standard gene and the incomplete dominance of the white gene. This gene cannot exist in the homozygous state due to the lethal factor.


My Gene Nomenclature

Before working out the Punnet Squares for many of the possible color combinations I need to clarify the nomenclature that I will be using. I have changed from my previous writing to now use the MCBA recognized and accepted nomenclature for the sake of creating universality. Here are the abbreviations you will see:

Standard *
Std
(bl)
(w)
(pw)
(b)
(B)
(V)
(S)
(P)
(Pr)
Black (or TOV or Velvet)(dominant)
-
Bl
-
-
-
-
-
-
-
-
White(dominant)
-
-
W
-
-
-
-
-
-
-
Beige(dominant)
-
-
-
Pw
-
-
-
-
-
-
Ebony(weakly dominant accumulative)
-
-
-
-
B
-
-
-
-
-
Charcoal(recessive) **
-
-
-
-
-
b
-
-
-
-
Violet (recessive)
-
-
-
-
-
-
v
-
-
-
Sapphire (recessive)
-
-
-
-
-
-
-
s
-
-
Beige, Pink-eyed (recessive) **
-
-
-
-
-
-
-
-
p
-
Beige, Black-eyed (recessive) **
-
-
-
-
-
-
-
-
-
pr

*Standard is one gene whose nomenclature I'm dealing with differently then MCBA for the sake of simplification. Standard carries the possibility of all colors so is actually blbl/ww/pwpw/bb/BB/VV/SS/PP/PrPr (and some others that I'm not even dealing with). Because only that part of the formula pertinent to the mutation under consideration is used, a Heterozygous Beige in MCBA nomenclature would be Pwpw. In my nomenclature it is Pw/Std. Black Velvet would be Blbl. For me it's Bl/Std. That makes your basic Standard much easier: Std/Std!

** I am not using the Charcoals or Recessive Beiges in my charts, but they would be worked out the same as the other recessives.

Please understand that "the jury is still out" as to accurate genetic formulas for each color mutation. Much research is still in progress. The "Gene Formula" describes an animal's genetic capabilities.

I prefer to use the term "TOV" rather then "Black" as I believe this can be confusing for the novice who is trying to understand the difference between Black and Ebony.

To learn how to use this information in Punnet Squares to figure out the possible outcomes of your breeding efforts go here


To see the possible outcomes when breeding some of these colors you can click on those colors that are underlined. I'm getting started on this, as of November '01.
A GREAT web page to visit to easily get possible outcomes is here:



Standard/Dominant colors

Phenotype
Genotype
Gene Formula
Black Velvet (or TOV Standard) Standard + TOV
(StdStd + BlStd)
BlStd + StdStd
Hetero Beige Standard + Beige
(StdStd + PwStd)
PwStd + StdStd
Standard Grey Standard + Standard
(StdStd + StdStd)
StdStd

White (Mosaic, Wilson, or Silver)

Standard + White
(StdStd + WStd)
WStd + StdStd

Dominant/Dominant Hybrids

Phenotype
Genotype
Gene Formula
Homo Beige Homozygous Beige
(PwPw)
PwPw
Homo Beige Pink White White + Homo Beige
(WStd + PwPw)
WPw + PwStd
Pink White
(or Beige Mosaic)
White + Hetero Beige
(WStd + PwStd)
WPw + WStd + PwStd + StdStd

TOV Beige
(or Brown Velvet)

Hetero Beige + Black Velvet
(PwStd + BlStd)
BlPw + PwStd + BlStd + StdStd
TOV Homo Beige Homo Beige + Black Velvet
(PwPw + BlStd)
BlPw + PwStd
TOV Homo Beige Pink White TOV White + Homo Beige
(WBlStd + PwPw)
WPw + BlPw + PwStd + WBlPw
TOV Pink White
(or TOV Beige Mosaic)
TOV White + Hetero Beige
(WBlStd + PwStd)
WPw + WStd + BlPw + BlStd + PwStd + StdStd + WBlPw + WBlStd 
TOV White
(or Black and White)
White + Black Velvet
(WStd + BlStd)
WBl + WStd + BlStd + StdStd

Recessive/Recessive Hybrids
Recessive/Weakly Dominant Hybrids

Phenotype
Genotype
Gene Formula
Ebony/Sapphire carrier Homo Ebony + Hetero Sapphire
(BB + Stds)
BStd + Bs
Ebony/Violet carrier Homo Ebony + Hetero Violet
(BB + Stdv)
BStd + Bv
Homo Ebony Homo Ebony
(BB)
BB
Sapphire Homo Sapphire
(ss)
ss (I changed this nomenclature 6/02)
Sapphire/Violet carrier Homo Sapphire + Hetero Violet
(ss + Stdv)
Stds + sv
Solid Sapphire Homo Ebony + Homo Sapphire
(BB + ss)
Bs
Solid Violet Homo Ebony + Homo Violet
(BB + vv)
Bv
Violet Homo Violet
(vv)
v v (I changed this nomenclature 6/02)
Violet and Sapphire
(or Sapphire and Violet)
Homo Violet + Homo Sapphire
(vv + ss)
vs
Violet/Sapphire carrier Homo Violet + Hetero Sapphire
(vv + Stds)
Stdv + vs

 

Dominant/Recessive Hybrids
Dominant/Weakly Dominant Hybrids

Phenotype
Genotype
Gene Formula
Beige/Sapphire carrier Hetero Beige + Hetero Sapphire
(PwStd + Stds)
PwStd + Pws + StdStd + Stds
Beige/Violet carrier Hetero Beige + Hetero Violet
(PwStd + Stdv)
PwStd + Pwv + StdStd + Stdv
Beige Sapphire Hetero Beige + Homo Sapphire
(PwStd + ss)
Pws + Stds
Beige Violet Hetero Beige + Homo Violet
(PwStd + vv)
Pwv + Stdv
Black Velvet/Sapphire carrier Black Velvet + Hetero Sapphire
(BlStd + Stds)
BlStd + Bls + StdStd + Stds
Black Velvet/Violet carrier Black Velvet + Hetero Violet
(BlStd + Stdv)
BlStd + Blv + StdStd + Stdv
Hetero Ebony, light
(or Standard/Ebony carrier)
Standard + Hetero Ebony
(StdStd + StdB)
StdStd + StdB
Hetero Ebony, medium light Hetero Ebony + Hetero Ebony
(StdB + StdB)
StdStd + StdB + StdB + BB
Hetero Ebony, medium Standard + Homo Ebony
(StdStd + BB)
StdB 
Hetero Ebony, dark Hetero Ebony + Homo Ebony
(StdB + BB)
StdB + BB
Homo Beige Sapphire Homo Beige + Homo Sapphire
(PwPw + ss)
Pws 
Homo Beige Violet Homo Beige + Homo Violet
(PwPw + vv)
Pwv 
Homo Beige Pastel Homo Beige + Hetero Ebony
(PwPw + StdB)
PwStd + PwB
Homo Beige/Sapphire carrier Homo Beige + Hetero Sapphire
(PwPw + Stds)
PwStd + Pws

Homo Beige Tan

Homo Beige + Homo Ebony
(PwPw + BB)
PwB
Homo Beige/Violet carrier Homo Beige + Hetero Violet
(PwPw + Stdv)
PwStd + Pwv
Pastel, light
(or Beige/Ebony carrier)
Hetero Beige + Hetero Ebony
(PwStd + BStd)
PwB + PwStd + StdB + StdStd
Pastel, dark Hetero Beige + Homo Ebony
(PwStd + BB)
PwB + StdB 
Standard/Sapphire carrier Standard + Hetero Sapphire
(StdStd + Stds)
StdStd + Stds
Standard/Violet carrier Standard + Hetero Violet
(StdStd + Stdv)
StdStd + Stdv
Standard/Violet and Sapphire carrier Hetero Violet + Hetero Sapphire
(Stdv + Stds)
StdStd + Stds + Stdv + vs
Tan, dark Tan + Homo Ebony
(PwB/B + BB)
PwBB + BB
Tan, medium Pastel + Homo Ebony
(PwB + BB)
PwB + BB 
TOV Hetero Ebony, dark Black Velvet + Homo Ebony
(BlStd + BB)
BlB + StdB 
TOV Hetero Ebony, light
(or Black Velvet/Ebony carrier)
Black Velvet + Hetero Ebony
(BlStd + StdB)
BlStd + BlB + StdStd + StdB 
TOV Homo Ebony, dark TOV Homo Ebony + Homo Ebony
(BlB/B + BB)
BlBB + BB
TOV Homo Ebony, light TOV Hetero Ebony + Homo Ebony
(BlB + BB)
BlB + BB
TOV Pastel, dark TOV Beige + Homo Ebony
(BlPwStd + BB)
BlB + PwB + StdB + BlPwB
TOV Pastel, light
(or Brown Velvet/Ebony carrier)
TOV Beige + Hetero Ebony
(BlPwStd + StdB)
BlStd + BlB + PwStd + PwB + StdStd + StdB + BlPwStd + BlPwB 
TOV Sapphire Black Velvet + Homo Sapphire
(BlStd + ss)
Bls + Stds
TOV Tan, dark TOV Tan + Homo Ebony
(BlPwStdB/B + BB)
BlB + PwB + StdBB + BB +BlPwB + BlBB + BlPwBB + BlBBB
TOV Tan, medium TOV Pastel + Homo Ebony
(BlPwStdB + BB)
BlB + PwB + StdB + BB + BlPwB + BlBB
TOV Violet Black Velvet + Homo Violet
(BlStd + vv)
Blv + Stdv 
White and Ebony, dark WhiteEbony + Homo Ebony
(WB/StdB + BB)
WBB + StdBB 
White and Ebony, light
(or White Mosaic/Ebony carrier)
White + Hetero Ebony
(WStd + StdB)
WStd + WB + StdStd + StdB 
White and Ebony, medium light White + Homo Ebony
(WStd + BB)
WB + StdB 
White and Ebony, medium WhiteEbony + Hetero Ebony
(WB/StdB + StdB)
WBStd + WBB + StdB + StdBB
White and Pastel, dark Pink White + Homo Ebony
(PwWStd + BB)
PwB + WB + StdB + PwWB 
White and Pastel, light
(or Pink White/Ebony carrier)
Pink White + Hetero Ebony
(PwWStd + StdB)
PwStd + PwB + WStd + WB + StdStd + StdB + PwWStd + PwWB 
White and Sapphire White + Homo Sapphire
(WStd + ss)
Ws + Stds 
White and Tan, dark Tan White + Homo Ebony
(PwBBWStd + BB)
PwBB + BB + WB + StdB + PwBB + PwWB 
White and Tan, medium Pastel White + Homo Ebony
(PwBWStd + BB)
PwB + BB + WB + StdB + PwBB + PwWB 
White and Violet White + Homo Violet
(WStd + vv)
Wv + Stdv 
White/Sapphire Carrier White + Hetero Sapphire
(WStd + Stds)
WStd + Ws + StdStd + Stds 
White/Violet carrier White + Hetero Violet
(WStd + Stdv)
WStd + Wv + StdStd + Stdv

Several people have inquired about a more easily printed copy of these charts.
For these you can just go here.


Punnet Squares

To determine the possible outcomes of breeding we use a Punnet Square. The genes of one parent are listed across the top and the genes of the other parent are listed down the side. The resulting alleles then appear in the table. To determine the genetic formula of the offspring go back to the tables above.

Here are some examples to help you get started on making your own:

 

Beige x Beige

 
BEIGE
B
E
I
G
E
PwStd
StdStd
PwStd
PwStd/PwStd
(HomoBeige)
PwStd/StdStd
(HeteroBeige)
StdStd
StdStd/PwStd
(HeteroBeige)
StdStd/StdStd
(Standard)

Possible outcome:

25% Standard
25% Homo Beige
50% Hetero Beige



Beige x Black Velvet

BLACK VELVET
B
E
I
G
E
BlStd
StdStd
PwStd
PwStd/BlStd
(BrownVelvet)
PwStd/StdStd
(HeteroBeige)
StdStd
StdStd/BlStd
(BlackVelvet)
StdStd/StdStd
(Standard)

Possible outcome:

25% Brown Velvet
25% Beige
25% Black Velvet
25% Standard



White x Brown Velvet

BROWN VELVET
W
H
I
T
E
PwBl
PwStd
BlStd
StdStd
WStd
WStd/PwBl
(TOV Pink White)
WStd/PwStd
(Pink White)
WStd/BlStd
(TOV White)
WStd/StdStd
(White)
StdStd
StdStd/PwBl
(Brown Velvet)
StdStd/PwStd
(Beige)
StdStd/BlStd
(Black Velvet)
StdStd/StdStd
(Standard)

Possible outcome:

12.5% TOV Pink White
12.5% Pink White
12.5% TOV White
12.5% White
12.5% Brown Velvet
12.5% Beige
12.5% Black Velvet
12.5% Standard





Homo Pink White + Beige/Violet carrier

BEIGE/VIOLET CARRIER
HOMO
PINK
WHITE
StdStd
PwStd
Stdv
Pwv
PwStd
PwStd/StdStd
(Beige)
PwStd/PwStd
(HomoBeige)
PwStd/Stdv
(Beige/Violet carrier)
PwStd/Pwv
(HomoBeige/Violet carrier)
WPw
WPw/StdStd
(Pink White)
WPw/PwStd
(HomoPinkWhite)
WPw/Stdv
(PinkWhite/Violet carrier)
WPw/Pwv
(HomoPinkWhite/Violet carrier)
Possible outcome:
12.5% Beige
12.5% Homo Beige
12.5% Beige/Violet Carrier
12.5% Homo Beige/Violet Carrier

12.5% Pink White
12.5% HomoPinkWhite

12.5% Pink White/Violet carrier
12.5% HomoPinkWhite/Violet carrier

It is my hope that with the gene formula that I've provided, you'll be able to work out your own Punnet Squares to figure out the possible outcomes of your breeding efforts.